Non-functional with lots of nullPointer exceptions after upgrade

Setup, Configuration and Use Installation
1
  • Platform information:
    • Hardware: Raspberry Pi 3 Model B Rev 1.2
    • OS: Raspbian GNU/Linux 10 (buster) Linux 4.19.97-v7+
    • Java Runtime Environment: Zulu 8.46.0.225-CA-linux_aarch32hf) (build 1.8.0_252-b225)
    • openHAB version: 2.5.5

After upgrading the system through openhabian-config, openhab stopped working with lots of errors in the log file.
Since I am unable to upload the (very long) logfile, I’ll insert an extract here. Anyone have any ideas what’s wrong ? The system worked fine before the upgrade.
My setup uses the modbus binding and influxdb for persistence

2020-06-07 19:46:55.990 [ERROR] [org.openhab.core.model.core         ] - bundle org.openhab.core.model.core:2.5.0 (161)[org.eclipse.smarthome.model.core.internal.ModelRepositoryImpl(108)] :  Error during instantiation of the implementation object
java.lang.reflect.InvocationTargetException: null
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[?:1.8.0_252]
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) ~[?:1.8.0_252]
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[?:1.8.0_252]
	at java.lang.reflect.Constructor.newInstance(Constructor.java:423) ~[?:1.8.0_252]
	at org.apache.felix.scr.impl.inject.ComponentConstructor.newInstance(ComponentConstructor.java:309) ~[bundleFile:?]
	at org.apache.felix.scr.impl.manager.SingleComponentManager.createImplementationObject(SingleComponentManager.java:277) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.SingleComponentManager.createComponent(SingleComponentManager.java:114) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.SingleComponentManager.getService(SingleComponentManager.java:982) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.SingleComponentManager.getServiceInternal(SingleComponentManager.java:955) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.SingleComponentManager.getService(SingleComponentManager.java:900) [bundleFile:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceFactoryUse$1.run(ServiceFactoryUse.java:212) [org.eclipse.osgi-3.12.100.jar:?]
	at java.security.AccessController.doPrivileged(Native Method) [?:1.8.0_252]
	at org.eclipse.osgi.internal.serviceregistry.ServiceFactoryUse.factoryGetService(ServiceFactoryUse.java:210) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceFactoryUse.getService(ServiceFactoryUse.java:111) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceConsumer$2.getService(ServiceConsumer.java:45) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistrationImpl.getService(ServiceRegistrationImpl.java:508) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistry.getService(ServiceRegistry.java:461) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.BundleContextImpl.getService(BundleContextImpl.java:624) [org.eclipse.osgi-3.12.100.jar:?]
	at com.eclipsesource.jaxrs.publisher.internal.ResourceTracker.addingService(ResourceTracker.java:39) [bundleFile:?]
	at org.osgi.util.tracker.ServiceTracker$Tracked.customizerAdding(ServiceTracker.java:941) [osgi.core-6.0.0.jar:?]
	at org.osgi.util.tracker.ServiceTracker$Tracked.customizerAdding(ServiceTracker.java:870) [osgi.core-6.0.0.jar:?]
	at org.osgi.util.tracker.AbstractTracked.trackAdding(AbstractTracked.java:256) [osgi.core-6.0.0.jar:?]
	at org.osgi.util.tracker.AbstractTracked.track(AbstractTracked.java:229) [osgi.core-6.0.0.jar:?]
	at org.osgi.util.tracker.ServiceTracker$Tracked.serviceChanged(ServiceTracker.java:901) [osgi.core-6.0.0.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.FilteredServiceListener.serviceChanged(FilteredServiceListener.java:109) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.BundleContextImpl.dispatchEvent(BundleContextImpl.java:920) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.EventManager.dispatchEvent(EventManager.java:230) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.ListenerQueue.dispatchEventSynchronous(ListenerQueue.java:148) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistry.publishServiceEventPrivileged(ServiceRegistry.java:862) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistry.publishServiceEvent(ServiceRegistry.java:801) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistrationImpl.register(ServiceRegistrationImpl.java:127) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistry.registerService(ServiceRegistry.java:225) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.BundleContextImpl.registerService(BundleContextImpl.java:469) [org.eclipse.osgi-3.12.100.jar:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager$3.register(AbstractComponentManager.java:906) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager$3.register(AbstractComponentManager.java:892) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.RegistrationManager.changeRegistration(RegistrationManager.java:128) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager.registerService(AbstractComponentManager.java:959) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager.activateInternal(AbstractComponentManager.java:732) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.DependencyManager$SingleStaticCustomizer.addedService(DependencyManager.java:1045) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.DependencyManager$SingleStaticCustomizer.addedService(DependencyManager.java:999) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.ServiceTracker$Tracked.customizerAdded(ServiceTracker.java:1216) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.ServiceTracker$Tracked.customizerAdded(ServiceTracker.java:1137) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.ServiceTracker$AbstractTracked.trackAdding(ServiceTracker.java:944) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.ServiceTracker$AbstractTracked.track(ServiceTracker.java:880) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.ServiceTracker$Tracked.serviceChanged(ServiceTracker.java:1168) [bundleFile:?]
	at org.apache.felix.scr.impl.BundleComponentActivator$ListenerInfo.serviceChanged(BundleComponentActivator.java:125) [bundleFile:?]
	at org.eclipse.osgi.internal.serviceregistry.FilteredServiceListener.serviceChanged(FilteredServiceListener.java:109) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.BundleContextImpl.dispatchEvent(BundleContextImpl.java:920) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.EventManager.dispatchEvent(EventManager.java:230) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.ListenerQueue.dispatchEventSynchronous(ListenerQueue.java:148) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistry.publishServiceEventPrivileged(ServiceRegistry.java:862) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistry.publishServiceEvent(ServiceRegistry.java:801) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistrationImpl.register(ServiceRegistrationImpl.java:127) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistry.registerService(ServiceRegistry.java:225) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.BundleContextImpl.registerService(BundleContextImpl.java:469) [org.eclipse.osgi-3.12.100.jar:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager$3.register(AbstractComponentManager.java:906) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager$3.register(AbstractComponentManager.java:892) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.RegistrationManager.changeRegistration(RegistrationManager.java:128) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager.registerService(AbstractComponentManager.java:959) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager.activateInternal(AbstractComponentManager.java:732) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager.enableInternal(AbstractComponentManager.java:666) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager.enable(AbstractComponentManager.java:432) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.ConfigurableComponentHolder.enableComponents(ConfigurableComponentHolder.java:665) [bundleFile:?]
	at org.apache.felix.scr.impl.BundleComponentActivator.initialEnable(BundleComponentActivator.java:338) [bundleFile:?]
	at org.apache.felix.scr.impl.Activator.loadComponents(Activator.java:382) [bundleFile:?]
	at org.apache.felix.scr.impl.Activator.access$200(Activator.java:49) [bundleFile:?]
	at org.apache.felix.scr.impl.Activator$ScrExtension.start(Activator.java:264) [bundleFile:?]
	at org.apache.felix.scr.impl.AbstractExtender.createExtension(AbstractExtender.java:196) [bundleFile:?]
	at org.apache.felix.scr.impl.AbstractExtender.modifiedBundle(AbstractExtender.java:169) [bundleFile:?]
	at org.apache.felix.scr.impl.AbstractExtender.modifiedBundle(AbstractExtender.java:49) [bundleFile:?]
	at org.osgi.util.tracker.BundleTracker$Tracked.customizerModified(BundleTracker.java:482) [osgi.core-6.0.0.jar:?]
	at org.osgi.util.tracker.BundleTracker$Tracked.customizerModified(BundleTracker.java:415) [osgi.core-6.0.0.jar:?]
	at org.osgi.util.tracker.AbstractTracked.track(AbstractTracked.java:232) [osgi.core-6.0.0.jar:?]
	at org.osgi.util.tracker.BundleTracker$Tracked.bundleChanged(BundleTracker.java:444) [osgi.core-6.0.0.jar:?]
	at org.eclipse.osgi.internal.framework.BundleContextImpl.dispatchEvent(BundleContextImpl.java:908) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.EventManager.dispatchEvent(EventManager.java:230) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.ListenerQueue.dispatchEventSynchronous(ListenerQueue.java:148) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.EquinoxEventPublisher.publishBundleEventPrivileged(EquinoxEventPublisher.java:213) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.EquinoxEventPublisher.publishBundleEvent(EquinoxEventPublisher.java:120) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.EquinoxEventPublisher.publishBundleEvent(EquinoxEventPublisher.java:112) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.EquinoxContainerAdaptor.publishModuleEvent(EquinoxContainerAdaptor.java:168) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.Module.publishEvent(Module.java:476) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.Module.start(Module.java:467) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.ModuleContainer$ContainerStartLevel.incStartLevel(ModuleContainer.java:1634) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.ModuleContainer$ContainerStartLevel.incStartLevel(ModuleContainer.java:1614) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.ModuleContainer$ContainerStartLevel.doContainerStartLevel(ModuleContainer.java:1585) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.ModuleContainer$ContainerStartLevel.dispatchEvent(ModuleContainer.java:1528) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.ModuleContainer$ContainerStartLevel.dispatchEvent(ModuleContainer.java:1) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.EventManager.dispatchEvent(EventManager.java:230) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.EventManager$EventThread.run(EventManager.java:340) [org.eclipse.osgi-3.12.100.jar:?]
Caused by: java.lang.LinkageError: Error reading class bytes: org.eclipse.emf.common.notify.impl.BasicNotifierImpl$EAdapterList
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findClassImpl(ClasspathManager.java:570) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClassImpl(ClasspathManager.java:538) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:525) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:368) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:446) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:395) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:387) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) ~[org.eclipse.osgi-3.12.100.jar:?]
	at java.lang.ClassLoader.loadClass(ClassLoader.java:351) ~[?:1.8.0_252]
	at org.eclipse.smarthome.model.core.internal.ModelRepositoryImpl.<init>(ModelRepositoryImpl.java:70) ~[?:?]
	... 90 more
Caused by: java.io.IOException: /var/lib/openhab2/cache/org.eclipse.osgi/71/0/bundleFile
	at org.eclipse.osgi.storage.bundlefile.ZipBundleEntry$ZipBundleEntryInputStream.enrichExceptionWithBaseFile(ZipBundleEntry.java:190) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.storage.bundlefile.ZipBundleEntry$ZipBundleEntryInputStream.read(ZipBundleEntry.java:161) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.storage.StorageUtil.getBytes(StorageUtil.java:196) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.storage.bundlefile.BundleEntry.getBytes(BundleEntry.java:94) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findClassImpl(ClasspathManager.java:566) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClassImpl(ClasspathManager.java:538) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:525) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:368) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:446) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:395) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:387) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) ~[org.eclipse.osgi-3.12.100.jar:?]
	at java.lang.ClassLoader.loadClass(ClassLoader.java:351) ~[?:1.8.0_252]
	at org.eclipse.smarthome.model.core.internal.ModelRepositoryImpl.<init>(ModelRepositoryImpl.java:70) ~[?:?]
	... 90 more
Caused by: java.util.zip.ZipException: invalid code lengths set
	at java.util.zip.InflaterInputStream.read(InflaterInputStream.java:164) ~[?:1.8.0_252]
	at java.io.FilterInputStream.read(FilterInputStream.java:133) ~[?:1.8.0_252]
	at org.eclipse.osgi.storage.bundlefile.ZipBundleEntry$ZipBundleEntryInputStream.read(ZipBundleEntry.java:159) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.storage.StorageUtil.getBytes(StorageUtil.java:196) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.storage.bundlefile.BundleEntry.getBytes(BundleEntry.java:94) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findClassImpl(ClasspathManager.java:566) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClassImpl(ClasspathManager.java:538) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:525) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:368) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:446) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:395) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:387) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) ~[org.eclipse.osgi-3.12.100.jar:?]
	at java.lang.ClassLoader.loadClass(ClassLoader.java:351) ~[?:1.8.0_252]
	at org.eclipse.smarthome.model.core.internal.ModelRepositoryImpl.<init>(ModelRepositoryImpl.java:70) ~[?:?]
	... 90 more
2020-06-07 19:46:56.078 [ERROR] [org.openhab.core.model.core         ] - bundle org.openhab.core.model.core:2.5.0 (161)[org.eclipse.smarthome.model.core.internal.ModelRepositoryImpl(108)] :  Error during instantiation of the implementation object
java.lang.reflect.InvocationTargetException: null
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[?:1.8.0_252]
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) ~[?:1.8.0_252]
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[?:1.8.0_252]
	at java.lang.reflect.Constructor.newInstance(Constructor.java:423) ~[?:1.8.0_252]
	at org.apache.felix.scr.impl.inject.ComponentConstructor.newInstance(ComponentConstructor.java:309) ~[bundleFile:?]
	at org.apache.felix.scr.impl.manager.SingleComponentManager.createImplementationObject(SingleComponentManager.java:277) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.SingleComponentManager.createComponent(SingleComponentManager.java:114) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.SingleComponentManager.getService(SingleComponentManager.java:982) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.SingleComponentManager.getServiceInternal(SingleComponentManager.java:955) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager.activateInternal(AbstractComponentManager.java:756) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.DependencyManager$SingleStaticCustomizer.addedService(DependencyManager.java:1045) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.DependencyManager$SingleStaticCustomizer.addedService(DependencyManager.java:999) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.ServiceTracker$Tracked.customizerAdded(ServiceTracker.java:1216) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.ServiceTracker$Tracked.customizerAdded(ServiceTracker.java:1137) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.ServiceTracker$AbstractTracked.trackAdding(ServiceTracker.java:944) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.ServiceTracker$AbstractTracked.track(ServiceTracker.java:880) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.ServiceTracker$Tracked.serviceChanged(ServiceTracker.java:1168) [bundleFile:?]
	at org.apache.felix.scr.impl.BundleComponentActivator$ListenerInfo.serviceChanged(BundleComponentActivator.java:125) [bundleFile:?]
	at org.eclipse.osgi.internal.serviceregistry.FilteredServiceListener.serviceChanged(FilteredServiceListener.java:109) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.BundleContextImpl.dispatchEvent(BundleContextImpl.java:920) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.EventManager.dispatchEvent(EventManager.java:230) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.ListenerQueue.dispatchEventSynchronous(ListenerQueue.java:148) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistry.publishServiceEventPrivileged(ServiceRegistry.java:862) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistry.publishServiceEvent(ServiceRegistry.java:801) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistrationImpl.register(ServiceRegistrationImpl.java:127) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.serviceregistry.ServiceRegistry.registerService(ServiceRegistry.java:225) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.BundleContextImpl.registerService(BundleContextImpl.java:469) [org.eclipse.osgi-3.12.100.jar:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager$3.register(AbstractComponentManager.java:906) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager$3.register(AbstractComponentManager.java:892) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.RegistrationManager.changeRegistration(RegistrationManager.java:128) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager.registerService(AbstractComponentManager.java:959) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager.activateInternal(AbstractComponentManager.java:732) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager.enableInternal(AbstractComponentManager.java:666) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.AbstractComponentManager.enable(AbstractComponentManager.java:432) [bundleFile:?]
	at org.apache.felix.scr.impl.manager.ConfigurableComponentHolder.enableComponents(ConfigurableComponentHolder.java:665) [bundleFile:?]
	at org.apache.felix.scr.impl.BundleComponentActivator.initialEnable(BundleComponentActivator.java:338) [bundleFile:?]
	at org.apache.felix.scr.impl.Activator.loadComponents(Activator.java:382) [bundleFile:?]
	at org.apache.felix.scr.impl.Activator.access$200(Activator.java:49) [bundleFile:?]
	at org.apache.felix.scr.impl.Activator$ScrExtension.start(Activator.java:264) [bundleFile:?]
	at org.apache.felix.scr.impl.AbstractExtender.createExtension(AbstractExtender.java:196) [bundleFile:?]
	at org.apache.felix.scr.impl.AbstractExtender.modifiedBundle(AbstractExtender.java:169) [bundleFile:?]
	at org.apache.felix.scr.impl.AbstractExtender.modifiedBundle(AbstractExtender.java:49) [bundleFile:?]
	at org.osgi.util.tracker.BundleTracker$Tracked.customizerModified(BundleTracker.java:482) [osgi.core-6.0.0.jar:?]
	at org.osgi.util.tracker.BundleTracker$Tracked.customizerModified(BundleTracker.java:415) [osgi.core-6.0.0.jar:?]
	at org.osgi.util.tracker.AbstractTracked.track(AbstractTracked.java:232) [osgi.core-6.0.0.jar:?]
	at org.osgi.util.tracker.BundleTracker$Tracked.bundleChanged(BundleTracker.java:444) [osgi.core-6.0.0.jar:?]
	at org.eclipse.osgi.internal.framework.BundleContextImpl.dispatchEvent(BundleContextImpl.java:908) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.EventManager.dispatchEvent(EventManager.java:230) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.ListenerQueue.dispatchEventSynchronous(ListenerQueue.java:148) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.EquinoxEventPublisher.publishBundleEventPrivileged(EquinoxEventPublisher.java:213) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.EquinoxEventPublisher.publishBundleEvent(EquinoxEventPublisher.java:120) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.EquinoxEventPublisher.publishBundleEvent(EquinoxEventPublisher.java:112) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.framework.EquinoxContainerAdaptor.publishModuleEvent(EquinoxContainerAdaptor.java:168) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.Module.publishEvent(Module.java:476) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.Module.start(Module.java:467) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.ModuleContainer$ContainerStartLevel.incStartLevel(ModuleContainer.java:1634) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.ModuleContainer$ContainerStartLevel.incStartLevel(ModuleContainer.java:1614) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.ModuleContainer$ContainerStartLevel.doContainerStartLevel(ModuleContainer.java:1585) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.ModuleContainer$ContainerStartLevel.dispatchEvent(ModuleContainer.java:1528) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.container.ModuleContainer$ContainerStartLevel.dispatchEvent(ModuleContainer.java:1) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.EventManager.dispatchEvent(EventManager.java:230) [org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.framework.eventmgr.EventManager$EventThread.run(EventManager.java:340) [org.eclipse.osgi-3.12.100.jar:?]
Caused by: java.lang.LinkageError: Error reading class bytes: org.eclipse.emf.common.notify.impl.BasicNotifierImpl$EAdapterList
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findClassImpl(ClasspathManager.java:570) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClassImpl(ClasspathManager.java:538) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:525) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:368) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:446) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:395) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:387) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) ~[org.eclipse.osgi-3.12.100.jar:?]
	at java.lang.ClassLoader.loadClass(ClassLoader.java:351) ~[?:1.8.0_252]
	at org.eclipse.smarthome.model.core.internal.ModelRepositoryImpl.<init>(ModelRepositoryImpl.java:70) ~[?:?]
	... 62 more
Caused by: java.io.IOException: /var/lib/openhab2/cache/org.eclipse.osgi/71/0/bundleFile
	at org.eclipse.osgi.storage.bundlefile.ZipBundleEntry$ZipBundleEntryInputStream.enrichExceptionWithBaseFile(ZipBundleEntry.java:190) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.storage.bundlefile.ZipBundleEntry$ZipBundleEntryInputStream.read(ZipBundleEntry.java:161) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.storage.StorageUtil.getBytes(StorageUtil.java:196) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.storage.bundlefile.BundleEntry.getBytes(BundleEntry.java:94) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findClassImpl(ClasspathManager.java:566) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClassImpl(ClasspathManager.java:538) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:525) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:368) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:446) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:395) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:387) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) ~[org.eclipse.osgi-3.12.100.jar:?]
	at java.lang.ClassLoader.loadClass(ClassLoader.java:351) ~[?:1.8.0_252]
	at org.eclipse.smarthome.model.core.internal.ModelRepositoryImpl.<init>(ModelRepositoryImpl.java:70) ~[?:?]
	... 62 more
Caused by: java.util.zip.ZipException: invalid code lengths set
	at java.util.zip.InflaterInputStream.read(InflaterInputStream.java:164) ~[?:1.8.0_252]
	at java.io.FilterInputStream.read(FilterInputStream.java:133) ~[?:1.8.0_252]
	at org.eclipse.osgi.storage.bundlefile.ZipBundleEntry$ZipBundleEntryInputStream.read(ZipBundleEntry.java:159) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.storage.StorageUtil.getBytes(StorageUtil.java:196) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.storage.bundlefile.BundleEntry.getBytes(BundleEntry.java:94) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findClassImpl(ClasspathManager.java:566) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClassImpl(ClasspathManager.java:538) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:525) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:368) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:446) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:395) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:387) ~[org.eclipse.osgi-3.12.100.jar:?]
	at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) ~[org.eclipse.osgi-3.12.100.jar:?]
	at java.lang.ClassLoader.loadClass(ClassLoader.java:351) ~[?:1.8.0_252]
	at org.eclipse.smarthome.model.core.internal.ModelRepositoryImpl.<init>(ModelRepositoryImpl.java:70) ~[?:?]
	... 62 more
2

did you try cleaning cache?

3

After upgrade (or clear cache) make at least two restarts. Wait for the first start to finish and expect a hell of alot of errors/warnings. When it has settled, do another restart.
The erros/warnings usually happens when the cache is beeing rebuild. The second restart should look alot more normal, without errors or warning. A third restart could be usefull, but I have never made more than two.

1 Like
4

OK, openhab is back in a working state.
However, the many exceptions at startup remain
Any hints on how to further debug this ?

5

Nope, and its not worth it…Its highly known, and to my understanding its an unfortunate design of openhab to do this. No need to debug.
Only fix is to restart openhab a couple of times everytime you have either upgraded or cleared the cache/tmp, (upgrading clear the cache and tmp as well, which is why the same thing happens).

6

I would disagree if there are still NPE after two restarts. There is one known exception regarding jersey but apart from the startup should be clean.

7

@J-N-K,
Any tips on how I can further investigate and mitigate the exceptions ?

8

Is this line always present? If so, what is the output of bundle:list 71 (or, if the number changed after your restarts, try that number. It looks like this bundle is corrupt and cannot be read.

9

71 stays equal after restart

10

Please answer that

11

The output is

START LEVEL 100 , List Threshold: 50
ID │ State  │ Lvl │ Version               │ Name
───┼────────┼─────┼───────────────────────┼────────────────────────────────────────────────────────
71 │ Active │  80 │ 2.12.0.v20160420-0247 │ EMF Common
12

I would suggest to shutdown openHAB, delete this directory (maybe move it somewhere else, so you have a backup and restart. It seems the bundle file is corrupt, maybe an incomplete download.

13

Thanks Jan,
Should it be replaced with something else ? Or will it be downloaded automatically when openhab starts up ?

14

It shpuld be installed automatically if it is missing. You may need to restart twice.

15

OK, That didn’t work.
After restarting, only

[INFO ] [ort.modbus.internal.ModbusManagerImpl] - Modbus manager activated

in the log. Even after numerous restarts.
Same thing after putting back the file under the …/71/0 folder.

I guess I’ll have to start all over.