Is there an alternative python 3 integration for the NGRE instead of jython which is version 2. This would be useful to use some popular machine learning libraries inside rules.
Not that I am aware of. Some of Python 3 was backported to Python 2 with future libraries.
Not yet, but you can utilize your Python 3 libraries from within Jython using executeCommandLine.
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You can use HABApp, its Python 3 and can run everything.