What you are getting in now is making prov toolbox running under OSGi. My suggestion would be to check if someone ever did that.
My rough guess is that nobody ever even attempted that and you will stuck with long and painful OSGification process. What blows whole thing up currently is prov-toolbox and its dependency on commons-cli. Quickest workaround which I can suggest is just copying the class you need to binding for time being.
Please be aware that next in the queue is JAXB.
Best luck,
Łukasz